STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM64506.1Transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport. (516 aa)    
Predicted Functional Partners:
SDM56023.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.849
SDN17061.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 
 0.800
SDN17447.1
Two-component system, NtrC family, sensor histidine kinase AtoS.
  
  
 0.716
SDM24570.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.714
SDL87607.1
PAS domain-containing protein.
 
  
 0.696
SDN36479.1
PAS fold-containing protein.
    
 0.694
SDL79238.1
Two-component system, chemotaxis family, response regulator CheV.
   
 
 0.652
SDN05633.1
Two-component system, chemotaxis family, sensor kinase CheA.
     
 0.643
SDN05544.1
PAS domain S-box-containing protein.
    
 0.595
SDN07974.1
PAS domain S-box-containing protein.
    
 0.595
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.