STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM74362.1Transcriptional regulator, XRE family with cupin sensor. (190 aa)    
Predicted Functional Partners:
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
 0.721
pheA
Prephenate dehydratase.
  
 
 0.711
SDM14158.1
NAD-dependent deacetylase.
  
 
  0.697
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.692
SDN07847.1
Ribosomal protein S18 acetylase RimI.
 
 
 0.682
SDL83449.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.665
SDN27007.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  0.661
SDN33184.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  0.661
SDN02284.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.650
SDN10491.1
Transcriptional regulator, GntR family.
  
  
 0.645
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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