STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM87188.1Two component transcriptional regulator, LuxR family. (223 aa)    
Predicted Functional Partners:
SDM28940.1
Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX.
 0.957
SDN17061.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.954
SDM11669.1
Two-component system, NarL family, sensor histidine kinase DegS.
 0.943
SDN05633.1
Two-component system, chemotaxis family, sensor kinase CheA.
 0.939
SDM24570.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.933
SDL78601.1
Signal transduction histidine kinase.
 0.924
SDN36479.1
PAS fold-containing protein.
  
 0.798
SDL79238.1
Two-component system, chemotaxis family, response regulator CheV.
  
 0.762
SDL87607.1
PAS domain-containing protein.
 
 0.760
SDN17447.1
Two-component system, NtrC family, sensor histidine kinase AtoS.
 
 
 0.757
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.