Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
WM42_0125 | WM42_0126 | ABC transporter family protein. | aBC superfamily ATP binding cassette transporter, permease protein. | 0.833 |
WM42_0125 | WM42_0127 | ABC transporter family protein. | Hypothetical protein. | 0.824 |
WM42_0125 | WM42_0128 | ABC transporter family protein. | Inosine-uridine preferring nucleoside hydrolase family protein. | 0.683 |
WM42_0126 | WM42_0125 | aBC superfamily ATP binding cassette transporter, permease protein. | ABC transporter family protein. | 0.833 |
WM42_0126 | WM42_0127 | aBC superfamily ATP binding cassette transporter, permease protein. | Hypothetical protein. | 0.794 |
WM42_0126 | WM42_0128 | aBC superfamily ATP binding cassette transporter, permease protein. | Inosine-uridine preferring nucleoside hydrolase family protein. | 0.683 |
WM42_0126 | WM42_0987 | aBC superfamily ATP binding cassette transporter, permease protein. | Cobalt transport family protein. | 0.900 |
WM42_0126 | WM42_0988 | aBC superfamily ATP binding cassette transporter, permease protein. | Heme ABC exporter, ATP-binding protein CcmA. | 0.433 |
WM42_0126 | WM42_1168 | aBC superfamily ATP binding cassette transporter, permease protein. | Cobalt transport family protein. | 0.900 |
WM42_0126 | WM42_1169 | aBC superfamily ATP binding cassette transporter, permease protein. | Heme ABC exporter, ATP-binding protein CcmA. | 0.433 |
WM42_0126 | WM42_1811 | aBC superfamily ATP binding cassette transporter, permease protein. | Cobalt transport family protein. | 0.900 |
WM42_0126 | WM42_2448 | aBC superfamily ATP binding cassette transporter, permease protein. | ABC transporter family protein. | 0.759 |
WM42_0126 | WM42_2449 | aBC superfamily ATP binding cassette transporter, permease protein. | bioY family protein. | 0.920 |
WM42_0127 | WM42_0125 | Hypothetical protein. | ABC transporter family protein. | 0.824 |
WM42_0127 | WM42_0126 | Hypothetical protein. | aBC superfamily ATP binding cassette transporter, permease protein. | 0.794 |
WM42_0127 | WM42_0128 | Hypothetical protein. | Inosine-uridine preferring nucleoside hydrolase family protein. | 0.699 |
WM42_0128 | WM42_0125 | Inosine-uridine preferring nucleoside hydrolase family protein. | ABC transporter family protein. | 0.683 |
WM42_0128 | WM42_0126 | Inosine-uridine preferring nucleoside hydrolase family protein. | aBC superfamily ATP binding cassette transporter, permease protein. | 0.683 |
WM42_0128 | WM42_0127 | Inosine-uridine preferring nucleoside hydrolase family protein. | Hypothetical protein. | 0.699 |
WM42_0987 | WM42_0126 | Cobalt transport family protein. | aBC superfamily ATP binding cassette transporter, permease protein. | 0.900 |
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