STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABM71172.1COG1793 ATP-dependent DNA ligase [DNA replication, recombination, and repair]. (437 aa)    
Predicted Functional Partners:
ABM70069.1
COG1793 ATP-dependent DNA ligase [DNA replication, recombination, and repair].
  
  
  0.933
ABM70846.1
NAD-dependent DNA ligase N-terminus.
     
 0.905
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.862
ABM71171.1
Conserved hypothetical protein.
       0.754
xthA
COG708 Exonuclease III [DNA replication, recombination, and repair].
 
 
 0.690
holB
DNA polymerase III, delta prime subunit; COG470 ATPase involved in DNA replication [DNA replication, recombination, and repair].
   
 0.673
ABM71173.1
Conserved hypothetical protein.
       0.629
ABM71170.1
Conserved hypothetical protein.
       0.586
ABM69931.1
Conserved hypothetical protein.
  
     0.560
dinG
Rad3-related DNA helicases.
  
 
 0.538
Your Current Organism:
Prochlorococcus marinus AS9601
NCBI taxonomy Id: 146891
Other names: P. marinus str. AS9601, Prochlorococcus marinus str. AS9601, Prochlorococcus sp. AS9601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.