STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI90_2842Hypothetical protein; Belongs to the WXG100 family. (420 aa)    
Predicted Functional Partners:
LI90_1456
Alkaline serine exoprotease A precursor; Belongs to the peptidase S8 family.
 
 0.972
LI90_319
Hypothetical protein.
  
 
   0.843
LI90_1356
Secretion protein snm4.
  
 
 
 0.832
LI90_679
Hypothetical protein.
  
 
  0.812
LI90_854
Thymidylate kinase.
    
   0.811
LI90_4045
Hypothetical protein.
  
 
  0.791
LI90_1350
Hypothetical protein.
 
 
   0.781
LI90_1355
Putative ATP/GTP binding protein (putative membrane protein).
  
 
   0.767
LI90_2057
C-terminal processing peptidase-3; Belongs to the peptidase S41A family.
   
   0.767
LI90_2368
Polysaccharide deacetylase.
    
 0.743
Your Current Organism:
Streptomyces thermoautotrophicus
NCBI taxonomy Id: 1469144
Other names: DSM 41605, LMG 19855, LMG:19855, NBRC 101056, S. thermoautotrophicus, strain UBT1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.