STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI90_3324Hypothetical protein. (342 aa)    
Predicted Functional Partners:
LI90_3325
GCN5-related N-acetyltransferase.
 
     0.787
LI90_923
Hypothetical protein.
  
     0.774
LI90_1403
Helix-turn-helix domain protein.
  
     0.757
LI90_3031
Uncharacterized protein.
  
     0.746
LI90_281
Aminoglycoside phosphotransferase.
  
     0.723
LI90_1506
Hypothetical protein.
  
     0.721
LI90_1031
Uncharacterized protein.
  
     0.715
LI90_4259
Hypothetical protein.
  
     0.694
LI90_3201
Hypothetical protein.
  
     0.693
LI90_37
Hypothetical protein.
  
     0.686
Your Current Organism:
Streptomyces thermoautotrophicus
NCBI taxonomy Id: 1469144
Other names: DSM 41605, LMG 19855, LMG:19855, NBRC 101056, S. thermoautotrophicus, strain UBT1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.