STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI90_342Arsenical pump-driving ATPase. (328 aa)    
Predicted Functional Partners:
LI90_341
Arsenical pump-driving ATPase.
 
     0.969
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
    
   0.873
LI90_4078
Hypothetical protein.
  
     0.724
LI90_2697
Uncharacterized protein.
 
     0.694
LI90_567
UDP-glucose 4-epimerase.
  
     0.688
LI90_4094
Helix-turn-helix domain protein.
  
     0.683
LI90_568
Phospholipid/glycerol acyltransferase.
  
     0.660
LI90_3246
Mov34/MPN/PAD-1 family protein.
  
   0.634
LI90_347
NUDIX hydrolase.
 
     0.630
LI90_973
Uncharacterized protein.
  
     0.609
Your Current Organism:
Streptomyces thermoautotrophicus
NCBI taxonomy Id: 1469144
Other names: DSM 41605, LMG 19855, LMG:19855, NBRC 101056, S. thermoautotrophicus, strain UBT1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.