Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LI90_1744 | rplS | LI90_1744 | LI90_1304 | Hypothetical protein. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.993 |
LI90_1744 | rplT | LI90_1744 | LI90_1819 | Hypothetical protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
LI90_1744 | rpmB | LI90_1744 | LI90_1279 | Hypothetical protein. | 50S ribosomal protein L28-1; Belongs to the bacterial ribosomal protein bL28 family. | 0.993 |
LI90_1744 | rpmE | LI90_1744 | LI90_1143 | Hypothetical protein. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.983 |
LI90_1744 | rpmI | LI90_1744 | LI90_1818 | Hypothetical protein. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.994 |
LI90_1744 | rpsA | LI90_1744 | LI90_1522 | Hypothetical protein. | 30S ribosomal protein S1. | 0.994 |
LI90_1744 | rpsB | LI90_1744 | LI90_1323 | Hypothetical protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
LI90_1744 | rpsG | LI90_1744 | LI90_3756 | Hypothetical protein. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
LI90_1744 | rpsO | LI90_1744 | LI90_1357 | Hypothetical protein. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
LI90_1744 | rpsP | LI90_1744 | LI90_1300 | Hypothetical protein. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.993 |
rplS | LI90_1744 | LI90_1304 | LI90_1744 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Hypothetical protein. | 0.993 |
rplS | rplT | LI90_1304 | LI90_1819 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplS | rpmB | LI90_1304 | LI90_1279 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L28-1; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
rplS | rpmE | LI90_1304 | LI90_1143 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.999 |
rplS | rpmI | LI90_1304 | LI90_1818 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplS | rpsA | LI90_1304 | LI90_1522 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S1. | 0.997 |
rplS | rpsB | LI90_1304 | LI90_1323 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplS | rpsG | LI90_1304 | LI90_3756 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rplS | rpsO | LI90_1304 | LI90_1357 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplS | rpsP | LI90_1304 | LI90_1300 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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