Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LI90_4062 | LI90_4064 | LI90_4062 | LI90_4064 | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein. | 0.559 |
LI90_4062 | cysS | LI90_4062 | LI90_4063 | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.932 |
LI90_4062 | ispF | LI90_4062 | LI90_4067 | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 2-C-methyl-D-erythritol 2; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.693 |
LI90_4064 | LI90_4062 | LI90_4064 | LI90_4062 | Hypothetical protein. | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.559 |
LI90_4064 | LI90_4065 | LI90_4064 | LI90_4065 | Hypothetical protein. | Hypothetical protein. | 0.455 |
LI90_4064 | LI90_4066 | LI90_4064 | LI90_4066 | Hypothetical protein. | Cell division protein FtsH; Belongs to the AAA ATPase family. | 0.455 |
LI90_4064 | cysS | LI90_4064 | LI90_4063 | Hypothetical protein. | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.559 |
LI90_4064 | ispF | LI90_4064 | LI90_4067 | Hypothetical protein. | 2-C-methyl-D-erythritol 2; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.432 |
LI90_4065 | LI90_4064 | LI90_4065 | LI90_4064 | Hypothetical protein. | Hypothetical protein. | 0.455 |
LI90_4065 | LI90_4066 | LI90_4065 | LI90_4066 | Hypothetical protein. | Cell division protein FtsH; Belongs to the AAA ATPase family. | 0.895 |
LI90_4065 | ispF | LI90_4065 | LI90_4067 | Hypothetical protein. | 2-C-methyl-D-erythritol 2; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.750 |
LI90_4066 | LI90_4064 | LI90_4066 | LI90_4064 | Cell division protein FtsH; Belongs to the AAA ATPase family. | Hypothetical protein. | 0.455 |
LI90_4066 | LI90_4065 | LI90_4066 | LI90_4065 | Cell division protein FtsH; Belongs to the AAA ATPase family. | Hypothetical protein. | 0.895 |
LI90_4066 | cysS | LI90_4066 | LI90_4063 | Cell division protein FtsH; Belongs to the AAA ATPase family. | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.672 |
LI90_4066 | ispF | LI90_4066 | LI90_4067 | Cell division protein FtsH; Belongs to the AAA ATPase family. | 2-C-methyl-D-erythritol 2; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.727 |
cysS | LI90_4062 | LI90_4063 | LI90_4062 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.932 |
cysS | LI90_4064 | LI90_4063 | LI90_4064 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Hypothetical protein. | 0.559 |
cysS | LI90_4066 | LI90_4063 | LI90_4066 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cell division protein FtsH; Belongs to the AAA ATPase family. | 0.672 |
cysS | ispF | LI90_4063 | LI90_4067 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 2-C-methyl-D-erythritol 2; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.691 |
ispF | LI90_4062 | LI90_4067 | LI90_4062 | 2-C-methyl-D-erythritol 2; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.693 |
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