STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI90_410Phosphonate-transporting ATPase. (150 aa)    
Predicted Functional Partners:
LI90_4275
Hypothetical protein.
  
 0.999
LI90_409
Hypothetical protein.
  
 0.989
LI90_562
Macrolide export ATP-binding/permease protein MacB.
 0.988
LI90_3150
Hypothetical protein.
  
 0.974
LI90_3832
Hypothetical protein.
   
 
 0.937
LI90_560
Efflux transporter; RND family; MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.918
LI90_4066
Cell division protein FtsH; Belongs to the AAA ATPase family.
  
     0.635
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.599
LI90_882
ABC transporter related protein.
  
  
  0.593
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
   
 0.587
Your Current Organism:
Streptomyces thermoautotrophicus
NCBI taxonomy Id: 1469144
Other names: DSM 41605, LMG 19855, LMG:19855, NBRC 101056, S. thermoautotrophicus, strain UBT1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.