STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI90_96Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
LI90_95
Transcriptional regulator; XRE family.
     0.964
LI90_94
Hypothetical protein.
 
     0.884
LI90_97
Creatinine amidohydrolase.
       0.757
LI90_98
Hypothetical protein.
       0.757
LI90_3612
Putative C1 regulatory protein.
  
     0.752
LI90_2915
Hypothetical protein.
  
     0.729
LI90_3635
Regulatory protein.
  
     0.696
LI90_394
Putative transcriptional regulator.
  
     0.672
LI90_3977
Hypothetical protein.
 
     0.666
LI90_4142
Hypothetical protein.
  
     0.655
Your Current Organism:
Streptomyces thermoautotrophicus
NCBI taxonomy Id: 1469144
Other names: DSM 41605, LMG 19855, LMG:19855, NBRC 101056, S. thermoautotrophicus, strain UBT1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.