STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPH54503.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
OPH54504.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.961
OPH54505.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.958
OPH54506.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.949
OPH59927.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.599
OPH55000.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.595
OPH56855.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
OPH56392.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.565
OPH54501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.563
OPH55988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.557
OPH54502.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
Your Current Organism:
Paenibacillus ferrarius
NCBI taxonomy Id: 1469647
Other names: CCTCC AB 2013369, KCTC 33419, P. ferrarius, Paenibacillus ferrarius Cao et al. 2015, Paenibacillus sp. CY1, strain CY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.