STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDD76_106145Unannotated protein. (499 aa)    
Predicted Functional Partners:
EDD76_106144
Unannotated protein; Belongs to the pseudouridine synthase RsuA family.
       0.615
EDD76_104193
Unannotated protein.
  
 
 0.598
EDD76_10455
Unannotated protein.
  
     0.561
EDD76_10840
Unannotated protein.
  
     0.504
EDD76_106146
Unannotated protein.
       0.497
EDD76_11398
Unannotated protein.
  
     0.472
EDD76_11787
Unannotated protein.
  
     0.471
EDD76_10423
Unannotated protein.
   
 
 0.467
EDD76_10461
Unannotated protein.
  
     0.426
EDD76_12335
Unannotated protein.
  
     0.407
Your Current Organism:
Kineothrix alysoides
NCBI taxonomy Id: 1469948
Other names: ATCC TSD-26, Clostridium sp. KNHs209, DSM 100556, K. alysoides, Kineothrix alysoides Haas and Blanchard 2017, Lachnospiraceae bacterium KNHs209, strain KNHs209
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.