STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO67040.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (9750 aa)    
Predicted Functional Partners:
AMO68961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.913
AMO67037.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.800
AMO67038.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.781
AMO67035.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.732
AMO70241.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.609
AMO67036.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.588
AMO67039.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.576
AMO69798.1
Endoglycoceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 
 0.434
AMO69164.1
Hypothetical protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
 
 
 0.432
Your Current Organism:
Zhongshania aliphaticivorans
NCBI taxonomy Id: 1470434
Other names: JCM 30138, KACC 18120, Spongiibacter sp. SM-2, Z. aliphaticivorans, Zhongshania aliphaticivorans Lo et al. 2014, strain SM-2, strain SM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.