STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO67624.1Iron-sulfur cluster-binding protein, Rieske family; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)    
Predicted Functional Partners:
AMO67725.1
Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.950
AMO69731.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.745
AMO68992.1
Flavin-dependent monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.730
AMO68993.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.714
AMO67625.1
Acetoacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
AMO70286.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.616
AMO67488.1
Aromatic-ring-hydroxylating dioxygenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.613
AMO70051.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.613
AMO67744.1
Ketoacid CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.595
AMO67743.1
CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.540
Your Current Organism:
Zhongshania aliphaticivorans
NCBI taxonomy Id: 1470434
Other names: JCM 30138, KACC 18120, Spongiibacter sp. SM-2, Z. aliphaticivorans, Zhongshania aliphaticivorans Lo et al. 2014, strain SM-2, strain SM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.