STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO67846.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (337 aa)    
Predicted Functional Partners:
AMO67878.1
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
AMO67312.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.664
AMO67738.1
6-O-methylguanine DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.544
AMO67845.1
2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
AMO67847.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.504
AMO67600.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.489
AMO67574.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.451
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.424
rpoD
RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.415
AMO69723.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.402
Your Current Organism:
Zhongshania aliphaticivorans
NCBI taxonomy Id: 1470434
Other names: JCM 30138, KACC 18120, Spongiibacter sp. SM-2, Z. aliphaticivorans, Zhongshania aliphaticivorans Lo et al. 2014, strain SM-2, strain SM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.