STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI38120.1Response regulator receiver domain-containing protein. (121 aa)    
Predicted Functional Partners:
SHI38196.1
PAS domain S-box-containing protein.
0.998
SHK11913.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.996
SHK34619.1
PAS/PAC sensor hybrid histidine kinase.
 
0.991
SHJ10185.1
Histidine kinase.
 
 
  0.979
SHI38157.1
Ammonium transporter.
  
 0.975
SHK35302.1
Histidine kinase.
 
0.948
SHI67404.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 
 0.942
SHJ96449.1
Hypothetical protein.
  
 0.940
SHI38355.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 
0.935
SHJ93117.1
Adenylate cyclase, class 3.
 
 0.887
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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