STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI66660.1DNA-binding transcriptional regulator, MarR family. (138 aa)    
Predicted Functional Partners:
SHI66611.1
Hypothetical protein.
 
     0.828
SHI66762.1
NADPH-glutathione reductase; Maintains high levels of reduced glutathione.
     
 0.566
SHK02323.1
Sulfur dehydrogenase subunit SoxD.
   
 
  0.562
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.548
SHI66563.1
Glutathione S-transferase.
  
    0.497
SHI66516.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.482
SHI66812.1
Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.
       0.416
SHI66861.1
Protease FtsH subunit HflC; HflC and HflK could regulate a protease.
       0.416
SHI66903.1
Hypothetical protein.
       0.416
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.