STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI69397.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
SHI69441.1
Binding-protein-dependent transport system inner membrane component.
     0.950
SHI69354.1
Binding-protein-dependent transport system inner membrane component.
 
     0.928
SHI69297.1
Hypothetical protein.
 
     0.894
SHJ13450.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
 0.883
SHJ38272.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
 0.883
SHJ13485.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
 0.859
SHJ38189.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
 0.859
SHI58073.1
Putative spermidine/putrescine transport system permease protein.
 
  
  0.805
SHK21158.1
Putative spermidine/putrescine transport system permease protein.
 
  
  0.784
SHJ13551.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
 0.781
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.