STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI58558.1Hypothetical protein. (277 aa)    
Predicted Functional Partners:
SHI58611.1
Hypothetical protein.
 
    
0.782
SHI58509.1
Hypothetical protein.
 
    
0.743
SHJ92607.1
Sphingolipid delta-4 desaturase.
  
     0.622
SHI59523.1
Stealth protein CR2, conserved region 2.
 
  
 0.490
SHJ35088.1
TupA-like ATPgrasp.
 
     0.480
SHK31024.1
Tetratricopeptide (TPR) repeat.
  
  0.468
SHJ22160.1
Uncharacterized membrane protein.
  
     0.467
SHI58416.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.446
SHI58465.1
2-oxohept-3-enedioate hydratase.
       0.446
SHJ49894.1
Phosphatidylinositol alpha-mannosyltransferase.
  
  
 0.443
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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