STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI88150.1Hemolysin-type calcium-binding repeat-containing protein. (266 aa)    
Predicted Functional Partners:
SHK52129.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
 
  
 0.730
SHK52079.1
HlyD family secretion protein/membrane fusion protein, adhesin transport system.
  
    0.706
SHK52168.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
 
  
 0.692
SHK24792.1
HlyD family secretion protein/membrane fusion protein, epimerase transport system.
  
    0.691
SHK24753.1
ATP-binding cassette, subfamily C/ATP-binding cassette, subfamily C, exporter for protease/lipase.
 
 
 0.668
SHJ64768.1
Ca2+-binding protein, RTX toxin-related.
 
 
0.659
SHI44202.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
0.651
SHI50899.1
ATP-binding cassette, subfamily C.
 
 
 0.640
SHK52040.1
VCBS repeat-containing protein.
 
  0.624
SHI50857.1
HlyD family secretion protein.
  
    0.613
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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