STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI98824.1(R)-ethylmalonyl-CoA mutase. (655 aa)    
Predicted Functional Partners:
SHK00917.1
methylmalonyl-CoA mutase.
 
0.999
SHJ31748.1
LAO/AO transport system kinase.
  
 0.996
SHK16258.1
methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase.
 
  
 0.982
SHI98916.1
crotonyl-CoA carboxylase/reductase.
  
 0.951
SHK53051.1
Oxaloacetate decarboxylase, alpha subunit.
    
 0.944
SHJ14442.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.924
SHJ10588.1
Indolepyruvate ferredoxin oxidoreductase beta subunit.
    
 0.904
SHI87667.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.883
SHJ30359.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.883
SHI49271.1
(2S)-methylsuccinyl-CoA dehydrogenase.
 
 
 0.866
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.