Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ01346.1 | SHJ01394.1 | SAMN05444000_104168 | SAMN05444000_104169 | Peptidoglycan glycosyltransferase. | Rod shape-determining protein MreD. | 0.848 |
SHJ01346.1 | SHJ01435.1 | SAMN05444000_104168 | SAMN05444000_104170 | Peptidoglycan glycosyltransferase. | Rod shape-determining protein MreC. | 0.994 |
SHJ01346.1 | SHJ01473.1 | SAMN05444000_104168 | SAMN05444000_104171 | Peptidoglycan glycosyltransferase. | Rod shape-determining protein MreB. | 0.982 |
SHJ01346.1 | SHK04134.1 | SAMN05444000_104168 | SAMN05444000_11797 | Peptidoglycan glycosyltransferase. | Cell division protein FtsI (penicillin-binding protein 3). | 0.910 |
SHJ01346.1 | ftsQ | SAMN05444000_104168 | SAMN05444000_11114 | Peptidoglycan glycosyltransferase. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.974 |
SHJ01346.1 | mrdB | SAMN05444000_104168 | SAMN05444000_104167 | Peptidoglycan glycosyltransferase. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.999 |
SHJ01346.1 | murC | SAMN05444000_104168 | SAMN05444000_1118 | Peptidoglycan glycosyltransferase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.613 |
SHJ01346.1 | murD | SAMN05444000_104168 | SAMN05444000_1112 | Peptidoglycan glycosyltransferase. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.552 |
SHJ01346.1 | murG | SAMN05444000_104168 | SAMN05444000_1117 | Peptidoglycan glycosyltransferase. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.582 |
SHJ01394.1 | SHJ01346.1 | SAMN05444000_104169 | SAMN05444000_104168 | Rod shape-determining protein MreD. | Peptidoglycan glycosyltransferase. | 0.848 |
SHJ01394.1 | SHJ01435.1 | SAMN05444000_104169 | SAMN05444000_104170 | Rod shape-determining protein MreD. | Rod shape-determining protein MreC. | 0.863 |
SHJ01394.1 | SHJ01473.1 | SAMN05444000_104169 | SAMN05444000_104171 | Rod shape-determining protein MreD. | Rod shape-determining protein MreB. | 0.718 |
SHJ01394.1 | ftsQ | SAMN05444000_104169 | SAMN05444000_11114 | Rod shape-determining protein MreD. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.633 |
SHJ01394.1 | mrdB | SAMN05444000_104169 | SAMN05444000_104167 | Rod shape-determining protein MreD. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.846 |
SHJ01435.1 | SHJ01346.1 | SAMN05444000_104170 | SAMN05444000_104168 | Rod shape-determining protein MreC. | Peptidoglycan glycosyltransferase. | 0.994 |
SHJ01435.1 | SHJ01394.1 | SAMN05444000_104170 | SAMN05444000_104169 | Rod shape-determining protein MreC. | Rod shape-determining protein MreD. | 0.863 |
SHJ01435.1 | SHJ01473.1 | SAMN05444000_104170 | SAMN05444000_104171 | Rod shape-determining protein MreC. | Rod shape-determining protein MreB. | 0.999 |
SHJ01435.1 | SHK04134.1 | SAMN05444000_104170 | SAMN05444000_11797 | Rod shape-determining protein MreC. | Cell division protein FtsI (penicillin-binding protein 3). | 0.910 |
SHJ01435.1 | ftsQ | SAMN05444000_104170 | SAMN05444000_11114 | Rod shape-determining protein MreC. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.403 |
SHJ01435.1 | mrdB | SAMN05444000_104170 | SAMN05444000_104167 | Rod shape-determining protein MreC. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.975 |
page 1 of 5