STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ03044.1Transcriptional regulator, XRE family. (121 aa)    
Predicted Functional Partners:
SHJ58182.1
Hypothetical protein.
  
     0.696
SHJ03083.1
Histidinol-phosphatase, inositol monophosphatase family.
       0.676
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.665
SHK02589.1
Hypothetical protein.
  
     0.628
SHI45870.1
Hypothetical protein.
  
     0.626
SHI80427.1
Beta-barrel assembly machine subunit BamE.
  
     0.603
SHI63075.1
Methyltransferase domain-containing protein.
  
     0.569
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.567
SHJ87079.1
Metal dependent phosphohydrolase.
  
     0.561
SHI45817.1
N-terminal double-transmembrane domain-containing protein.
  
     0.551
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.