STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ08577.1Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family. (522 aa)    
Predicted Functional Partners:
SHK09822.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.736
SHK31099.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
  0.691
SHK25149.1
Virulence factor.
 
     0.593
SHK31060.1
Protein of unknown function.
 
     0.586
SHI39051.1
N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit.
  
     0.546
SHJ08938.1
Dimethylamine/trimethylamine dehydrogenase.
  
  
  0.484
SHJ08536.1
Transcriptional regulator, TetR family.
       0.482
SHK38309.1
Dimethylamine/trimethylamine dehydrogenase.
  
  
  0.472
SHK38352.1
Dimethylamine/trimethylamine dehydrogenase.
  
  
  0.472
SHK25078.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.440
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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