STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ42949.1SAM domain (Sterile alpha motif). (1202 aa)    
Predicted Functional Partners:
SHK34619.1
PAS/PAC sensor hybrid histidine kinase.
   
 0.803
SHJ19398.1
Adenylate cyclase.
 
  
 0.799
SHK41506.1
TolB amino-terminal domain-containing protein.
 
  
 0.798
SHI38196.1
PAS domain S-box-containing protein.
   
 0.789
SHJ79095.1
Adenylate cyclase.
  
  
  0.742
SHK57306.1
Adenylate cyclase.
 
  
0.726
SHJ42917.1
Protein of unknown function.
       0.693
SHJ02290.1
Adenylate cyclase, class 3.
  
  
  0.690
SHK49065.1
Adenylate cyclase, class 3.
 
  
  0.683
SHK35302.1
Histidine kinase.
   
 0.676
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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