STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ45993.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
SHJ46035.1
Hypothetical protein.
     0.980
SHJ34541.1
Hypothetical protein.
  
     0.771
SHJ96790.1
Core-2/I-Branching enzyme.
  
     0.771
SHJ42217.1
Hypothetical protein.
  
     0.767
SHJ96821.1
Sulfotransferase family protein.
  
     0.765
SHK19921.1
Core-2/I-Branching enzyme.
  
     0.761
SHI76971.1
Hypothetical protein.
  
     0.756
SHI63372.1
H-type lectin domain-containing protein.
  
     0.753
SHJ58639.1
Hypothetical protein.
  
     0.752
SHK19959.1
Sulfotransferase family protein.
  
     0.751
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.