STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ55929.11,2-phenylacetyl-CoA epoxidase, catalytic subunit. (252 aa)    
Predicted Functional Partners:
SHJ56103.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 0.996
SHJ55976.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 0.995
SHJ56015.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
 
 0.988
SHJ56056.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
  
  0.984
SHJ56140.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
  
 
0.961
SHJ55694.1
acyl-CoA thioesterase.
 
 
 0.904
SHI94042.1
Reductive dehalogenase.
 
 0.871
SHJ55657.1
Enoyl-CoA hydratase.
 
 
  0.723
SHJ55372.1
Transcriptional regulator, PaaX family.
 
  
 0.719
SHJ55425.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
 
  
 0.702
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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