STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ85659.1Hpt domain-containing protein. (106 aa)    
Predicted Functional Partners:
SHJ85624.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.999
SHK35302.1
Histidine kinase.
 
 0.999
SHI38196.1
PAS domain S-box-containing protein.
  
 0.998
SHK34619.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.996
SHI43085.1
Serine/threonine-protein kinase RsbW.
 
 
 0.993
SHJ96449.1
Hypothetical protein.
  
 0.987
SHI38157.1
Ammonium transporter.
  
 
 0.984
SHJ71363.1
Haem-NO-binding.
 
    0.973
SHI43126.1
Anti-anti-sigma factor.
 
 
 0.962
SHI86310.1
Hint domain-containing protein.
   
  
 0.946
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.