STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ98218.1Reductive dehalogenase. (403 aa)    
Predicted Functional Partners:
SHJ98153.1
Hypothetical protein.
       0.664
SHJ98188.1
Hypothetical protein.
       0.664
SHJ85830.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.651
SHK07581.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.651
SHJ14442.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.618
SHK48445.1
Type III restriction enzyme, res subunit.
  
     0.571
SHJ98251.1
Adenylate/guanylate cyclase.
       0.556
SHJ55535.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.476
SHI60474.1
Glutamine synthetase.
  
     0.446
SHI60235.1
Tripartite tricarboxylate transporter TctB family protein.
  
     0.442
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.