STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ95571.1Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family. (497 aa)    
Predicted Functional Partners:
SHJ95605.1
Hypothetical protein.
       0.773
SHI38157.1
Ammonium transporter.
  
 
 0.627
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
  0.604
SHJ93117.1
Adenylate cyclase, class 3.
  
 
  0.587
SHK43482.1
Murein L,D-transpeptidase YcbB/YkuD.
  
     0.462
SHJ73558.1
NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator.
  
  
 0.460
SHJ38535.1
Myo-inositol-1(or 4)-monophosphatase.
  
    0.428
moaA
Cyclic pyranopterin monophosphate synthase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
    
 0.421
SHJ95504.1
Uncharacterized conserved protein, DUF302 family.
       0.411
SHK11264.1
Murein L,D-transpeptidase YcbB/YkuD.
  
     0.409
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.