STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK10390.1Glycerophosphoryl diester phosphodiesterase. (610 aa)    
Predicted Functional Partners:
SHK10427.1
Hypothetical protein.
     
 0.775
SHJ41434.1
Lysophospholipase.
    
 0.710
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.684
SHK58984.1
Adenylate and Guanylate cyclase catalytic domain-containing protein.
  
 
   0.590
SHI87570.1
Small-conductance mechanosensitive channel.
 
     0.587
SHI99881.1
Hypothetical protein.
 
 
 0.551
SHK10349.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
       0.533
SHJ02290.1
Adenylate cyclase, class 3.
  
 
   0.527
SHJ04024.1
PAP2 superfamily protein.
  
 0.511
SHI38157.1
Ammonium transporter.
  
  
 0.495
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.