STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK28034.1Glycine/D-amino acid oxidase. (358 aa)    
Predicted Functional Partners:
SHI81052.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.958
SHJ39806.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.958
SHJ48418.1
D-alanine transaminase.
     
 0.896
SHK28075.1
Protein of unknown function.
    
  0.839
SHK27989.1
Predicted oxidoreductase.
       0.774
SHI38850.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.711
SHJ71185.1
FAD dependent oxidoreductase.
  
  0.694
SHK54042.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
  
 0.670
SHK37634.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.669
SHJ20886.1
Thioredoxin reductase.
 
 0.651
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.