STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK28638.1Arylsulfatase. (543 aa)    
Predicted Functional Partners:
SHJ10679.1
Uncharacterized protein.
 
   0.848
SHI69722.1
Phosphoglycerol transferase MdoB.
  
   
 0.725
SHJ42294.1
Arylsulfatase A.
  
     0.699
SHK45498.1
Uncharacterized conserved protein.
  
     0.608
SHK49820.1
Uncharacterized conserved protein.
  
     0.574
SHK45543.1
Uncharacterized conserved protein.
  
     0.555
SHI70613.1
Hypothetical protein.
 
     0.536
SHK60602.1
His-Xaa-Ser system radical SAM maturase HxsB.
  
   0.518
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.479
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.479
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.