STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK38352.1Dimethylamine/trimethylamine dehydrogenase. (850 aa)    
Predicted Functional Partners:
SHI85304.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.999
SHJ10983.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
  
 0.989
pdhA-2
Pyruvate dehydrogenase E1 component beta subunit/2-oxoisovalerate dehydrogenase E1 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
 0.989
SHI38850.1
Glutamate synthase (NADPH) large subunit.
    
 0.932
SHI97743.1
2-oxoglutarate dehydrogenase E1 component.
  
 0.868
SHK46314.1
Dihydrolipoamide dehydrogenase.
  
 0.852
SHK38309.1
Dimethylamine/trimethylamine dehydrogenase.
 
 
0.848
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.844
SHK54042.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
  
 0.833
SHJ08938.1
Dimethylamine/trimethylamine dehydrogenase.
 
0.832
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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