STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK47062.1Site-specific DNA recombinase. (561 aa)    
Predicted Functional Partners:
SHK47102.1
Protein of unknown function.
 
     0.946
SHJ04436.1
Protein of unknown function.
 
     0.775
SHK15802.1
Protein of unknown function.
 
     0.775
SHK18760.1
Protein of unknown function.
 
     0.775
SHK57576.1
Protein of unknown function.
  
     0.775
SHK67957.1
Protein of unknown function.
 
     0.775
SHK47134.1
Protein of unknown function.
       0.773
SHK18803.1
ParB/RepB/Spo0J family partition protein.
 
   
 0.629
SHJ04516.1
DNA methylase.
  
     0.620
SHK57478.1
ParB-like nuclease domain-containing protein.
  
     0.566
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.