STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSQ38114.1AraC family transcriptional regulator; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)    
Predicted Functional Partners:
OSQ38113.1
Hypothetical protein; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.835
OSQ46287.1
Glutamate synthase; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.651
OSQ42075.1
AraC family transcriptional regulator; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.563
OSQ44764.1
AraC family transcriptional regulator; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
OSQ36933.1
Hypothetical protein; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
OSQ41333.1
Hypothetical protein; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.492
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.486
OSQ44550.1
Hypothetical protein; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.482
OSQ37611.1
Hypothetical protein; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.451
OSQ42630.1
Hypothetical protein; Bacteria available from MCCC 1A01428. Source DNA available from MCCC 1A01428; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
Your Current Organism:
Thalassospira sp. MCCC1A01428
NCBI taxonomy Id: 1470575
Other names: T. sp. MCCC 1A01428, Thalassospira sp. MCCC 1A01428
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