STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW41_01873Putative TonB-dependent receptor. (152 aa)    
Predicted Functional Partners:
BW41_01500
TonB-dependent receptor.
  
     0.683
BW41_00068
TonB-dependent receptor family protein.
  
     0.660
BW41_02060
TonB-dependent receptor.
  
     0.660
BW41_01582
TonB-dependent Receptor Plug domain protein.
  
 
  0.629
BW41_03090
TonB-dependent receptor family protein.
  
     0.578
BW41_00321
TonB-dependent Receptor Plug domain protein.
  
 
  0.565
BW41_00475
TonB-dependent receptor family protein.
  
     0.561
BW41_01874
Phosphoanhydride phosphohydrolase.
 
     0.545
BW41_01833
TonB-dependent receptor.
  
     0.543
BW41_01858
TonB-dependent receptor.
  
     0.543
Your Current Organism:
Sphingomonas sp. RIT328
NCBI taxonomy Id: 1470591
Other names: S. sp. RIT328
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.