STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0W44_02465Rhamnogalacturonan lyase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
B0W44_10425
Short-chain dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.812
AQS56111.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.765
AQS56109.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.752
AQS56110.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.752
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).
   
  
 0.700
xylB
Sugar ABC transporter permease; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
AQS57537.1
Gluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
  
  
 0.684
AQS57154.1
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
xylB-2
Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
AQS54798.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.591
Your Current Organism:
Novibacillus thermophilus
NCBI taxonomy Id: 1471761
Other names: Bacillales bacterium SG-1, Bacillales bacterium SG-2, CGMCC 1.12771, KCTC 33118, N. thermophilus, Novibacillus thermophilus Yang et al. 2015, strain SG-1
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