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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OME84232.1Stage V sporulation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)    
Predicted Functional Partners:
OME84233.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
OME76209.1
RNA polymerase factor sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
    0.684
OME84260.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0297 family.
  
     0.654
OME77028.1
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.610
OME76433.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.605
OME84235.1
single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.601
OME79353.1
Sporulation integral membrane protein YlbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.585
OME82555.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.575
OME77026.1
Stage III sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.572
OME82027.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.549
Your Current Organism:
Paenibacillus pabuli
NCBI taxonomy Id: 1472
Other names: ATCC 43899, Bacillus pabuli, CCUG 27415, CFBP 4262, CIP 103119, DSM 3036, IFO 13638, JCM 9074, LMG 15970, LMG:15970, NBRC 13638, NRRL NRS-924, P. pabuli, Paenibacillus pubuli
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