STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAP42760.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
OAP37780.1
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.698
rpoD
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.689
OAP37781.1
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.635
OAP37779.1
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.629
OAP37782.1
Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.614
OAP38589.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.611
OAP36683.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.523
OAP42742.1
Trimethylamine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the trimethylamine methyltransferase family.
  
     0.441
OAP42745.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
lexA
LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.404
Your Current Organism:
Ensifer glycinis
NCBI taxonomy Id: 1472378
Other names: CCBAU 23380, E. glycinis, Ensifer glycinis Yan et al. 2016, Ensifer sp. CCBAU 23380, Ensifer sp. CCBAU 251168, Ensifer sp. CCBAU 251169, Ensifer sp. CCBAU 251170, HAMBI 3645, LMG 29231, LMG:29231, Sinorhizobium sp. CCBAU 05593, Sinorhizobium sp. CCBAU 05617
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