STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR77688.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)    
Predicted Functional Partners:
AQR77689.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.817
AQR77690.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.816
AQR79746.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
AQR77687.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.459
AQR77691.1
Virulence protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
Your Current Organism:
Paenibacillus larvae
NCBI taxonomy Id: 147375
Other names: P. larvae subsp. larvae, Paenibacillus larvae subsp. larvae
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