STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBSD_1623Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (230 aa)    
Predicted Functional Partners:
MBSD_n2258
Unannotated protein.
  
 0.853
MBSD_2112
Unannotated protein.
  
 0.837
tal
Unannotated protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.798
MBSD_0045
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.737
MBSD_0163
Unannotated protein.
    
 0.723
MBSD_n2342
Unannotated protein.
    
0.723
MBSD_0308
Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.674
MBSD_0566
Unannotated protein.
  
 0.665
MBSD_0645
Unannotated protein.
  
 0.665
MBSD_n0924
Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.662
Your Current Organism:
Mizugakiibacter sediminis
NCBI taxonomy Id: 1475481
Other names: DSM 27098, M. sediminis, Mizugakiibacter sediminis Kojima et al. 2014, NBRC 109608, Xanthomonadaceae bacterium skMP5, strain skMP5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.