STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBSD_n0410Unannotated protein. (606 aa)    
Predicted Functional Partners:
MBSD_2388
Unannotated protein.
 
     0.520
MBSD_1048
Unannotated protein.
  
     0.517
MBSD_1856
Unannotated protein.
       0.503
MBSD_n0411
Unannotated protein.
       0.497
MBSD_1857
Unannotated protein.
       0.493
MBSD_1858
Unannotated protein.
       0.484
MBSD_1599
Unannotated protein.
  
     0.428
MBSD_n2443
Unannotated protein.
  
     0.424
MBSD_n0405
Unannotated protein.
 
     0.405
MBSD_n0406
Unannotated protein.
       0.404
Your Current Organism:
Mizugakiibacter sediminis
NCBI taxonomy Id: 1475481
Other names: DSM 27098, M. sediminis, Mizugakiibacter sediminis Kojima et al. 2014, NBRC 109608, Xanthomonadaceae bacterium skMP5, strain skMP5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.