STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBSD_1971Unannotated protein. (666 aa)    
Predicted Functional Partners:
MBSD_1983
Unannotated protein.
    
 0.966
GCA_000953855_02647
Unannotated protein.
 
 0.957
MBSD_n2092
Unannotated protein.
  0.953
MBSD_n0225
Unannotated protein.
   
 0.928
MBSD_2280
Unannotated protein.
  
  0.911
MBSD_1676
Unannotated protein.
   
 0.891
MBSD_2279
Unannotated protein.
  
 
  0.880
MBSD_n0154
Unannotated protein.
  
 
 0.841
MBSD_0616
Unannotated protein.
    
  0.823
MBSD_0197
Unannotated protein.
    
 0.801
Your Current Organism:
Mizugakiibacter sediminis
NCBI taxonomy Id: 1475481
Other names: DSM 27098, M. sediminis, Mizugakiibacter sediminis Kojima et al. 2014, NBRC 109608, Xanthomonadaceae bacterium skMP5, strain skMP5
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.