STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ06060.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (168 aa)    
Predicted Functional Partners:
AMQ06062.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.830
AMQ07548.1
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.784
AMQ06791.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.736
AMQ05988.1
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.713
AMQ05982.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.690
AMQ06708.1
Competence protein ComG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.677
AMQ05980.1
Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.673
AMQ06792.1
Competence protein ComG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.673
AMQ06061.1
Competence protein ComE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.619
AMQ07475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.601
Your Current Organism:
Sporosarcina psychrophila
NCBI taxonomy Id: 1476
Other names: ATCC 23304, BCRC 11738, Bacillus psychrophilus, CCM 2117, CCRC 11738, CCRC:11738, CCUG 28886, CIP 103267, DSM 3, IAM 12468, IFO 15381, JCM 9075, LMG 6929, LMG:6929, NBRC 15381, NRRL B-3397, S. psychrophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.