STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ythPABC transporter ATP-binding protein. (233 aa)    
Predicted Functional Partners:
ythQ
ABC transporter permease.
 
  
 0.895
ftsH_2
Cell-division protein FtsH; Belongs to the AAA ATPase family.
  
    0.582
CEG29421.1
ABC transporter-like protein.
 
   
0.557
gnd_2
6-phosphogluconate dehydrogenase.
       0.497
ecfA
ABC transporter-like protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
0.439
CEG25865.1
ABC transporter-like protein.
  
  0.426
CEG29030.1
ABC transporter ATP-binding protein.
 
    
0.425
CEG25562.1
ABC transporter.
  
  0.416
CEG28921.1
ABC transporter permease.
  
   0.411
yfiC
ABC transporter.
  
  0.408
Your Current Organism:
Bacillus sp. Bjedd
NCBI taxonomy Id: 1476857
Other names: B. sp. B-jedd, Bacillus sp. B-jedd
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