STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001659685_00337Unannotated protein. (188 aa)    
Predicted Functional Partners:
GCA_001659685_03162
Unannotated protein.
  
     0.766
GCA_001659685_01880
Unannotated protein.
  
  0.627
GCA_001659685_01890
Unannotated protein.
  
  0.627
GCA_001659685_00338
Unannotated protein.
       0.594
GCA_001659685_02359
Unannotated protein.
    
 0.565
GCA_001659685_00764
Unannotated protein.
     
 0.548
GCA_001659685_00336
Unannotated protein.
       0.528
GCA_001659685_00526
Unannotated protein.
    
 0.520
GCA_001659685_01025
Unannotated protein.
   
 
  0.513
GCA_001659685_04608
Unannotated protein.
   
 
  0.513
Your Current Organism:
Labilibacter marinus
NCBI taxonomy Id: 1477105
Other names: Bacteroidetes bacterium Y11, CICC 10837, KCTC 42400, L. marinus, Labilibacter marina, Labilibacter marinus (Liu et al. 2015) Lu et al. 2017, Saccharicrinis marinus, Saccharicrinis marinus Liu et al. 2015, strain Y11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.