STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM94533.1Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)    
Predicted Functional Partners:
nuoM
NADH:ubiquinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.911
AMM94493.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.884
AMM94790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.884
sbcD
DNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
  0.849
AMM92062.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.848
AMM93101.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.754
qcrC
Cytochrome Cbb3; Component of the menaquinol-cytochrome c reductase complex.
    
  0.754
qcrB
Cytochrome b6; Electron transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.754
AMM94451.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.754
yvdA
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.748
Your Current Organism:
Bacillus simplex
NCBI taxonomy Id: 1478
Other names: ATCC 49097, Arthrobacter sp. CHR2P1B2-M, B. simplex, Bacillus maroccanus, Bacillus sp. JP44SK12, Bacillus sp. JP44SK13, Bacillus sp. JP44SK25, Bacillus sp. JP44SK26, Bacillus sp. JP44SK29, Bacillus sp. JP44SK30, Bacillus sp. JP44SK31, Bacillus sp. JP44SK32, CCUG 28889, CIP 106934, IFO 15720, JCM 12307, LMG 11160, LMG:11160, NBRC 15720, NRRL NRS-960
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